Defensins and the dynamic genome: What we can learn from structural variation at human chromosome band 8p23.1
Open Access
- 30 October 2008
- journal article
- review article
- Published by Cold Spring Harbor Laboratory in Genome Research
- Vol. 18 (11) , 1686-1697
- https://doi.org/10.1101/gr.080945.108
Abstract
Over the past four years, genome-wide studies have uncovered numerous examples of structural variation in the human genome. This includes structural variation that changes copy number, such as deletion and duplication, and structural variation that does not change copy number, such as orientation and positional polymorphism. One region that contains all these types of variation spans the chromosome band 8p23.1. This region has been studied in some depth, and the focus of this review is to examine our current understanding of the variation of this region. We also consider whether this region is a good model for other structurally variable regions in the genome and what the implications of this variation are for clinical studies. Finally, we discuss the bioinformatics challenges raised, discuss the evolution of the region, and suggest some future priorities for structural variation research.Keywords
This publication has 109 references indexed in Scilit:
- Mapping and sequencing of structural variation from eight human genomesNature, 2008
- Breakpoint Mapping and Array CGH in Translocations: Comparison of a Phenotypically Normal and an Abnormal CohortAmerican Journal of Human Genetics, 2008
- Autosomal-Dominant Microtia Linked to Five Tandem Copies of a Copy-Number-Variable Region at Chromosome 4p16American Journal of Human Genetics, 2008
- Psoriasis is associated with increased β-defensin genomic copy numberNature Genetics, 2007
- Germline rates of de novo meiotic deletions and duplications causing several genomic disordersNature Genetics, 2007
- Diet and the evolution of human amylase gene copy number variationNature Genetics, 2007
- Copy number variants and genetic traits: closer to the resolution of phenotypic to genotypic variabilityNature Reviews Genetics, 2007
- Copy-number variation and association studies of human diseaseNature Genetics, 2007
- Global variation in copy number in the human genomeNature, 2006
- Fine-scale structural variation of the human genomeNature Genetics, 2005