Static deformation densities for cytosine and adenine
- 1 August 1988
- journal article
- research article
- Published by International Union of Crystallography (IUCr) in Acta crystallographica Section B, Structural science, crystal engineering and materials
- Vol. 44 (4) , 412-426
- https://doi.org/10.1107/s0108768188002356
Abstract
X-ray diffraction intensities for cytosine monohydrate have been measured at 97 K, to 2sin.theta./.lambda. = 2.74 .ANG.-1, and used in a deformation refinement. Crystal data for cytosine monohydrate at 97 K: a = 7.728 (1), b = 9.817 (3), c = 7.520 (1), .beta. = 100.50.degree. , V = 560.94 .ANG.3, R = 0.0341 for 6456 unique reflections. The experimental static deformation density of cytosine compares very well with the corresponding theoretical 4-31G** deformation density. Differences between theory and experiment occur at hydrogen-bonding sites. They are very similar to the corresponding differences between the theoretical deformation densities of formic acid monomer and cyclic dimer. The experimental static deformation density of 9-methyladenine was obtained in a deformation refinement against the low-temperature X-ray data of Craven and Benci [Acta Cryst. (1981), B37, 1584-1591]. It is similar t o the maps presented by these authors. The comparison of the experimental deformation density of 9-methyladenine with the theoretical 4-31G deformation density of adenine shows qualitative agreement, which is improved when the 4-31G results are corrected for the absence of polarization functions in the basis set. Some of the remaining differences reflect the effects of substituting CH3 for H. The weak N.cntdot..cntdot..cntdot.H hydrogen bonds have little influence on the deformation density in this structure.This publication has 1 reference indexed in Scilit:
- The structure of deuterated cytosine monohydrate at 82 K by neutron diffractionActa Crystallographica Section B: Structural Science, Crystal Engineering and Materials, 1980