Abstract
In the presence of CP violation, the effective Hamiltonian matrix describing a neutral meson anti-meson system does not commute with its hermitian conjugate. As a result, this matrix cannot be diagonalized by a unitary transformation and one needs to introduce a reciprocal basis. Although known, this fact is seldom discussed and almost never used. Here, we use this concept to highlight a parametrization of the Hamiltonian matrix in terms of physical observables, and we show that using it reduces a number of long and tedious derivations into simple matrix multiplications. These results have a straightforward application for propagation in matter. We also comment on the (mathematical) relation with neutrino oscillations.

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