Software Note: Using probe secondary structure information to enhance Affymetrix GeneChip background estimates

This publication has 29 references indexed in Scilit:

• Towards the uniform distribution of null P values on Affymetrix microarrays
  Genome Biology, 2007
• BK calcium-activated potassium channels regulate circadian behavioral rhythms and pacemaker output
  Nature Neuroscience, 2006
• Unusual Intron Conservation near Tissue-Regulated Exons Found by Splicing Microarrays
  PLoS Computational Biology, 2006
• Comparison of Affymetrix GeneChip expression measures
  Bioinformatics, 2006
• Effects of DNA secondary structure on oligonucleotide probe binding efficiency
  Computational Biology and Chemistry, 2005
• Implementation of a gene expression index calculation method based on the PDNN model
  Bioinformatics, 2004
• Solving the riddle of the bright mismatches: Labeling and effective binding in oligonucleotide arrays
  Physical Review E, 2003
• Exploration, normalization, and summaries of high density oligonucleotide array probe level data
  Biostatistics, 2003
• Molecular interactions on microarrays
  Nature Genetics, 1999
• Thermodynamics of Duplex Formation and Mismatch Discrimination on Photolithographically Synthesized Oligonucleotide Arrays
  Published by American Chemical Society (ACS) ,1997