Profile of native N‐linked glycan structures from human serum using high performance liquid chromatography on a microfluidic chip and time‐of‐flight mass spectrometry
- 30 March 2009
- journal article
- research article
- Published by Wiley in Proteomics
- Vol. 9 (7) , 1939-1951
- https://doi.org/10.1002/pmic.200800249
Abstract
Protein glycosylation involves the addition of monosaccharides in a stepwise process requiring no glycan template. Therefore, identifying the numerous glycoforms, including isomers, can help elucidate the biological function(s) of particular glycans. A method to assess the diversity of the N‐linked oligosaccharides released from human serum without derivatization has been developed using on‐line nanoLC and high resolution TOF MS. The N‐linked oligosaccharides were analyzed with MALDI FT‐ICR MS and microchip LC MS (HPLC–Chip/TOF MS). Two microfluidic chips were employed, the glycan chip (40 nL enrichment column, 43×0.075 mm2 i.d. analytical column) and the high capacity chip (160 nL enrichment column, 140×0.075 mm2 i.d. analytical column), both with graphitized carbon as the stationary phase. Both chips offered good sensitivity and reproducibility in separating a heterogeneous mixture of neutral and anionic oligosaccharides between injections. Increasing the length and volume of the enrichment and the analytical columns improved resolution of the peaks. Complex type N‐linked oligosaccharides were the most abundant oligosaccharides in human serum accounting for ∼96% of the total glycans identified, while hybrid and high mannose type oligosaccharides comprise the remaining ∼4%.Keywords
Funding Information
- National Institutes of Health
This publication has 43 references indexed in Scilit:
- Frontiers in glycomics: Bioinformatics and biomarkers in disease An NIH White Paper prepared from discussions by the focus groups at a workshop on the NIH campus, Bethesda MD (September 11–13, 2006)Proteomics, 2007
- Roles of glycans and glycopeptides in immune system and immune-related diseases.Current Medicinal Chemistry, 2006
- Inherited disorders of glycosylationMolecular Genetics and Metabolism, 2006
- Mass spectrometric approach for screening modifications of total serum N-glycome in human diseases: application to cirrhosisGlycobiology, 2005
- The sweet and sour of cancer: glycans as novel therapeutic targetsNature Reviews Cancer, 2005
- Tools for Glycomics: Mapping Interactions of Carbohydrates in Biological SystemsChemBioChem, 2004
- Biases and complex patterns in the residues flanking protein N-glycosylation sitesGlycobiology, 2003
- Detailed glycan analysis of serum glycoproteins of patients with congenital disorders of glycosylation indicates the specific defective glycan processing step and provides an insight into pathogenesisGlycobiology, 2003
- Evolutionary considerations in relating oligosaccharide diversity to biological functionGlycobiology, 1999
- Glycobiology: Toward Understanding the Function of SugarsChemical Reviews, 1996