The anatomy of microbial cell state transitions in response to oxygen
- 4 September 2007
- journal article
- Published by Cold Spring Harbor Laboratory in Genome Research
- Vol. 17 (10) , 1399-1413
- https://doi.org/10.1101/gr.6728007
Abstract
Adjustment of physiology in response to changes in oxygen availability is critical for the survival of all organisms. However, the chronology of events and the regulatory processes that determine how and when changes in environmental oxygen tension result in an appropriate cellular response is not well understood at a systems level. Therefore, transcriptome, proteome, ATP, and growth changes were analyzed in a halophilic archaeon to generate a temporal model that describes the cellular events that drive the transition between the organism’s two opposing cell states of anoxic quiescence and aerobic growth. According to this model, upon oxygen influx, an initial burst of protein synthesis precedes ATP and transcription induction, rapidly driving the cell out of anoxic quiescence, culminating in the resumption of growth. This model also suggests that quiescent cells appear to remain actively poised for energy production from a variety of different sources. Dynamic temporal analysis of relationships between transcription and translation of key genes suggests several important mechanisms for cellular sustenance under anoxia as well as specific instances of post-transcriptional regulation.Keywords
This publication has 68 references indexed in Scilit:
- Integrated proteomic and transcriptomic profiling of mouse lung development and Nmyc target genesMolecular Systems Biology, 2007
- Conservation of the metabolomic response to starvation across two divergent microbesProceedings of the National Academy of Sciences, 2006
- Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noiseNature, 2006
- Pfam: clans, web tools and servicesNucleic Acids Research, 2006
- An integrated systems approach for understanding cellular responses to gamma radiationMolecular Systems Biology, 2006
- Proteome analysis of yeast response to various nutrient limitationsMolecular Systems Biology, 2006
- A uniform proteomics MS/MS analysis platform utilizing open XML file formatsMolecular Systems Biology, 2005
- Multiplexed Protein Quantitation in Saccharomyces cerevisiae Using Amine-reactive Isobaric Tagging ReagentsMolecular & Cellular Proteomics, 2004
- KEGG: Kyoto Encyclopedia of Genes and GenomesNucleic Acids Research, 2000
- The Protein Data BankNucleic Acids Research, 2000