Thermodynamic and Structural Basis of Phosphorylation-Induced Disorder-to-Order Transition in the Regulatory Light Chain of Smooth Muscle Myosin
- 21 August 2008
- journal article
- research article
- Published by American Chemical Society (ACS) in Journal of the American Chemical Society
- Vol. 130 (37) , 12208-12209
- https://doi.org/10.1021/ja803143g
Abstract
We have performed molecular dynamics simulations of the phosphorylation domain (PD) of the regulatory light chain (RLC) of smooth muscle myosin, to gain insight into the thermodynamic principles governing the phosphorylation-induced disorder-to-order transition. Simulations were performed in explicit water under near-physiological conditions, starting with an ideal α-helix. In the absence of phosphorylation, the helical periodicity of the peptide was disrupted at residues T9−K11, while phosphorylation significantly favored the helical periodicity, in agreement with experimental data. Using the MM/PBSA approach, we calculated a relative free energy of −7.1 kcal/mol for the disorder-to-order transition. A large enthalpic decrease was compensated by a large loss of conformational entropy, despite the small helical increase (no more than three residues) upon phosphorylation. Phosphorylation decreased the conformational dynamics of K and R side chains, especially R16, which forms a salt bridge with pS19. Mutation of R16 to A or E prevented this phosphorylation-dependent ordering. We propose that phosphorylation balances the enthalpy−entropy compensation of the disorder-to-order transition of RLC via short and long-range electrostatic interactions with positively charged residues of the phosphorylation domain. We suggest that this balance is necessary to induce a disorder-to-order conformational change through a subtle energy switching.Keywords
This publication has 18 references indexed in Scilit:
- Molecular Dynamics Simulations Reveal a Disorder-to-Order Transition on Phosphorylation of Smooth Muscle MyosinBiophysical Journal, 2007
- Strengths of Hydrogen Bonds Involving Phosphorylated Amino Acid Side ChainsJournal of the American Chemical Society, 2007
- Phosphorylation-dependent Conformational Switch in Spin-labeled Phospholamban Bound to SERCAJournal of Molecular Biology, 2006
- Scalable molecular dynamics with NAMDJournal of Computational Chemistry, 2005
- The α-Helical Propensity of the Cytoplasmic Domain of Phospholamban: A Molecular Dynamics Simulation of the Effect of Phosphorylation and MutationBiophysical Journal, 2005
- Serine 16 Phosphorylation Induces an Order-to-Disorder Transition in Monomeric PhospholambanBiochemistry, 2005
- Improved Treatment of the Protein Backbone in Empirical Force FieldsJournal of the American Chemical Society, 2003
- Kinetics of Smooth Muscle Heavy Meromyosin with One Thiophosphorylated HeadJournal of Biological Chemistry, 2000
- All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of ProteinsThe Journal of Physical Chemistry B, 1998
- Analysis of Thermodynamic Determinants in Helix Propensities of Nonpolar Amino Acids through a Novel Free Energy CalculationJournal of the American Chemical Society, 1996