Ab Initio Study of13CαChemical Shift Anisotropy Tensors in Peptides
- 19 June 2004
- journal article
- research article
- Published by American Chemical Society (ACS) in Journal of the American Chemical Society
- Vol. 126 (27) , 8529-8534
- https://doi.org/10.1021/ja049879z
Abstract
This study reports magnitudes and the orientation of the 13Cα chemical shift anisotropy (CSA) tensors of peptides obtained using quantum chemical calculations. The dependency of the CSA tensor parameters on the energy optimization of hydrogen atom positions and hydrogen bonding effects and the use of zwitterionic peptides in the calculations are examined. Our results indicate that the energy optimization of the hydrogen atom positions in crystal structures is necessary to obtain accurate CSA tensors. The inclusion of intermolecular effects such as hydrogen bonding in the calculations provided better agreement between the calculated and experimental values; however, the use of zwitterionic peptides in calculations, with or without the inclusion of hydrogen bonding, did not improve the results. In addition, our calculated values are in good agreement with tensor values obtained from solid-state NMR experiments on glycine-containing tripeptides. In the case of peptides containing an aromatic residue, calculations on an isolated peptide yielded more accurate isotropic shift values than the calculations on extended structures of the peptide. The calculations also suggested that the presence of an aromatic ring in the extended crystal peptide structure influences the magnitude of the δ22 which the present level of ab initio calculations are unable to reproduce.Keywords
This publication has 48 references indexed in Scilit:
- Experimental and Theoretical Investigation of the13C and15N Chemical Shift Tensors in MelanostatinExploring the Chemical Shift Tensor as a Structural ProbeJournal of the American Chemical Society, 2004
- Glycyl CαChemical Shielding in Tripeptides: Measurement by Solid-State NMR and Correlation with X-ray Structure and TheoryJournal of the American Chemical Society, 2002
- Two-dimensional chemical shift/heteronuclear dipolar coupling spectra obtained with polarization inversion spin exchange at the magic angle and magic-angle sample spinning (PISEMAMAS)Solid State Nuclear Magnetic Resonance, 1995
- Chemical shifts in proteins: an ab initio study of carbon-13 nuclear magnetic resonance chemical shielding in glycine, alanine, and valine residuesJournal of the American Chemical Society, 1993
- A sequence preference for nucleation of α‐helix—crystal structure of Gly‐L‐Ala‐L‐Val and Gly‐L‐Ala‐L‐Leu: Some comments on the geometry of leucine zippersBiopolymers, 1991
- Structure and conformation of linear peptides XIII. Structure of l‐phenylalanyl‐glycyl‐glycineInternational Journal of Peptide and Protein Research, 1989
- Structure and conformation of linear peptides XII. Structure of tryptophanyl‐glycyl‐glycine dihydrateInternational Journal of Peptide and Protein Research, 1989
- Chemical shifts and bond modification effects for some small first-row-atom moleculesThe Journal of Chemical Physics, 1986
- Structure and conformation of linear peptidesInternational Journal of Peptide and Protein Research, 1984
- Diglycidyl ether of bisphenol A (DGEBA)Acta Crystallographica Section B: Structural Science, Crystal Engineering and Materials, 1981