Genealogical Analysis of a Closed Herd of Black Hairless Iberian Pigs

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Abstract
Livestock breeds are recognized as important components of world biodiversity. The Iberian pig is a swine breed well adapted to the Mediterranean forest ecosystem and provides cured products of high quality. The ancient population of Iberian pigs ( Sus scrofa meridionalis) was differentiated in several local types, the black hairless pigs representing the fattest genetic type. The conservation program of the Guadyerbas strain has maintained this germplasm isolated since 1945 as a closed population in an experimental herd. The complete pedigree, with 1000 breeding animals descending from 24 founders, has been used to measure along the successive cohorts of breeding animals the effective number of founders, effective number of nonfounders, founder genome equivalents, and expected number of founders' surviving alleles. For the last cohort, the values were 10.34, 1.42, 1.25, and 4.06, respectively. The evolution of inbreeding and coancestry and its components attributable to each founder were also studied. The rate of increase in inbreeding and coancestry was 2.21% per cohort, or 0.906% per year. Finally, the effect of family structure and mating tactics on the evolution of coancestry was also analyzed. The greatest rates of coancestry per cohort were attributable to unbalanced family sizes, and the use of minimum coancestry matings effectively delayed the increase in inbreeding.