When are Phylogeny Estimates From Molecular and Morphological Data Incongruent?

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Abstract
Many sources of information may be available for use in inferring phylogenetic relationships among a group of taxa. Because different character sets share a common evolutionary history, we expect reliable methods of phylogenetic analysis to recover the correct evolutionary tree regardless of the kind of data employed. To the extent that character sets “tell the truth” about their past, phylogenies inferred from different character sets should be congruent with the true tree and therefore with each other.

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