Draft genome sequence of the oilseed species Ricinus communis
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Open Access
- 22 August 2010
- journal article
- research article
- Published by Springer Nature in Nature Biotechnology
- Vol. 28 (9) , 951-956
- https://doi.org/10.1038/nbt.1674
Abstract
Castor beans are best known as a source of industrial lubricants and the toxic bioterror threat, ricin, and they have potential to provide biofuel. Chan et al. present the draft sequence of the Ricinus communis genome, the first for a member of the Euphorbiaceae. Castor bean (Ricinus communis) is an oilseed crop that belongs to the spurge (Euphorbiaceae) family, which comprises ∼6,300 species that include cassava (Manihot esculenta), rubber tree (Hevea brasiliensis) and physic nut (Jatropha curcas). It is primarily of economic interest as a source of castor oil, used for the production of high-quality lubricants because of its high proportion of the unusual fatty acid ricinoleic acid. However, castor bean genomics is also relevant to biosecurity as the seeds contain high levels of ricin, a highly toxic, ribosome-inactivating protein. Here we report the draft genome sequence of castor bean (4.6-fold coverage), the first for a member of the Euphorbiaceae. Whereas most of the key genes involved in oil synthesis and turnover are single copy, the number of members of the ricin gene family is larger than previously thought. Comparative genomics analysis suggests the presence of an ancient hexaploidization event that is conserved across the dicotyledonous lineage.Keywords
This publication has 77 references indexed in Scilit:
- An enzyme regulating triacylglycerol composition is encoded by the ROD1 gene of ArabidopsisProceedings of the National Academy of Sciences, 2009
- The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)Nature, 2008
- NONCODE v2.0: decoding the non-codingNucleic Acids Research, 2007
- The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phylaNature, 2007
- Worldwide genotyping of castor bean germplasm (Ricinus communis L.) using AFLPs and SSRsGenetic Resources and Crop Evolution, 2007
- The TIGR Plant Transcript Assemblies databaseNucleic Acids Research, 2006
- De novo identification of repeat families in large genomesBioinformatics, 2005
- Predicting transmembrane protein topology with a hidden markov model: application to complete genomes11Edited by F. CohenJournal of Molecular Biology, 2001
- tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic SequenceNucleic Acids Research, 1997
- Nuclear DNA content of some important plant speciesPlant Molecular Biology Reporter, 1991