Molecular Dynamics Simulations of the d(CCAACGTTGG)2 Decamer: Influence of the Crystal Environment
- 1 February 2000
- journal article
- Published by Elsevier in Biophysical Journal
- Vol. 78 (2) , 668-682
- https://doi.org/10.1016/s0006-3495(00)76625-2
Abstract
No abstract availableKeywords
This publication has 42 references indexed in Scilit:
- Molecular dynamics simulation study of DNA dodecamer d(CGCGAATTCGCG) in solution: conformation and hydrationJournal of Molecular Biology, 1997
- Influence of Magnesium Ions on Duplex DNA Structural, Dynamic, and Solvation PropertiesThe Journal of Physical Chemistry B, 1997
- Observation of theA-DNA toB-DNA Transition During Unrestrained Molecular Dynamics in Aqueous SolutionJournal of Molecular Biology, 1996
- VMD: Visual molecular dynamicsJournal of Molecular Graphics, 1996
- Molecular dynamics simulation studies of a high resolution Z-DNA crystalThe Journal of Chemical Physics, 1995
- B-DNA Twisting Correlates with Base-pair MorphologyJournal of Molecular Biology, 1995
- Mg2+ recognizes the sequence of DNA through its hydration shellJournal of the American Chemical Society, 1994
- Sequence selective coordination of Mg2+(aq) to DNAJournal of Inorganic Biochemistry, 1993
- Molecular dynamics of B-DNA including water and counterions: a 140-ps trajectory for d(CGCGAATTCGCG) based on the GROMOS force fieldJournal of the American Chemical Society, 1991
- Structure of the B-DNA decamer C-C-A-A-C-G-T-T-G-G and comparison with isomorphous decamers C-C-A-A-G-A-T-T-G-G and C-C-A-G-G-C-C-T-G-GJournal of Molecular Biology, 1991