Symmetric K+ and Mg2+ Ion-binding Sites in the 5S rRNA Loop E Inferred from Molecular Dynamics Simulations
- 9 December 2003
- journal article
- Published by Elsevier in Journal of Molecular Biology
- Vol. 335 (2) , 555-571
- https://doi.org/10.1016/j.jmb.2003.10.057
Abstract
No abstract availableKeywords
This publication has 72 references indexed in Scilit:
- Molecular dynamics of the frame-shifting pseudoknot from beet western yellows virus: the role of non-Watson-Crick base-pairing, ordered hydration, cation binding and base mutations on stability and unfolding 1 1Edited by J. DoudnaJournal of Molecular Biology, 2001
- Structural and energetic analysis of RNA recognition by a universally conserved protein from the signal recognition particleJournal of Molecular Biology, 2001
- Water and ion binding around r(UpA)12and d(TpA)12Oligomers - comparison with RNA and DNA (CpG)12 duplexesJournal of Molecular Biology, 2001
- DNA Structure: What's in Charge?Journal of Molecular Biology, 2000
- Stabilization of RNA tertiary structure by monovalent cationsJournal of Molecular Biology, 2000
- The Structural Basis of Ribosome Activity in Peptide Bond SynthesisScience, 2000
- 1 Å crystal structures of B -DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium 1 1Edited by I. TinocoJournal of Molecular Biology, 2000
- Localization of ammonium ions in the minor groove of DNA duplexes in solution and the origin of DNA A-tract bending 1 1Edited by I. TinocoJournal of Molecular Biology, 1999
- The CCP4 suite: programs for protein crystallographyActa Crystallographica Section D-Biological Crystallography, 1994
- Free energy of association of the 18-crown-6:K+ complex in water: a molecular dynamics simulationJournal of the American Chemical Society, 1990