A simple and efficient method for concentration of ocean viruses by chemical flocculation
Top Cited Papers
Open Access
- 19 August 2010
- journal article
- Published by Wiley in Environmental Microbiology Reports
- Vol. 3 (2) , 195-202
- https://doi.org/10.1111/j.1758-2229.2010.00208.x
Abstract
Summary: Ocean viruses alter ecosystems through host mortality, horizontal gene transfer and by facilitating remineralization of limiting nutrients. However, the study of wild viral populations is limited by inefficient and unreliable concentration techniques. Here, we develop a new technique to recover viruses from natural waters using iron‐based flocculation and large‐pore‐size filtration, followed by resuspension of virus‐containing precipitates in a pH 6 buffer. Recovered viruses are amenable to gene sequencing, and a variable proportion of phages, depending upon the phage, retain their infectivity when recovered. This Fe‐based virus flocculation, filtration and resuspension method (FFR) is efficient (> 90% recovery), reliable, inexpensive and adaptable to many aspects of marine viral ecology and genomics research.Keywords
This publication has 54 references indexed in Scilit:
- Genomic analysis of oceanic cyanobacterial myoviruses compared with T4‐like myoviruses from diverse hosts and environmentsEnvironmental Microbiology, 2010
- The use of antibiotics to improve phage detection and enumeration by the double-layer agar techniqueBMC Microbiology, 2009
- Genetic evaluation of relationship between mutations in rpoB and resistance of Mycobacterium tuberculosis to rifampinBMC Microbiology, 2009
- Portal protein diversity and phage ecologyEnvironmental Microbiology, 2008
- Assembly of Viral Metagenomes from Yellowstone Hot SpringsApplied and Environmental Microbiology, 2008
- Marine viruses — major players in the global ecosystemNature Reviews Microbiology, 2007
- Prevalence and Evolution of Core Photosystem II Genes in Marine Cyanobacterial Viruses and Their HostsPLoS Biology, 2006
- Viruses in the seaNature, 2005
- Three Prochlorococcus Cyanophage Genomes: Signature Features and Ecological InterpretationsPLoS Biology, 2005
- High abundance of viruses found in aquatic environmentsNature, 1989