PHYML Online--a web server for fast maximum likelihood-based phylogenetic inference
Top Cited Papers
Open Access
- 1 July 2005
- journal article
- Published by Oxford University Press (OUP) in Nucleic Acids Research
- Vol. 33 (Web Server) , W557-W559
- https://doi.org/10.1093/nar/gki352
Abstract
PHYML Online is a web interface to PHYML, a software that implements a fast and accurate heuristic for estimating maximum likelihood phylogenies from DNA and protein sequences. This tool provides the user with a number of options, e.g. nonparametric bootstrap and estimation of various evolutionary parameters, in order to perform comprehensive phylogenetic analyses on large datasets in reasonable computing time. The server and its documentation are available at http://atgc.lirmm.fr/phyml.Keywords
This publication has 10 references indexed in Scilit:
- Different Versions of the Dayhoff Rate MatrixMolecular Biology and Evolution, 2004
- IQPNNI: Moving Fast Through Tree Space and Stopping in TimeMolecular Biology and Evolution, 2004
- A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum LikelihoodSystematic Biology, 2003
- The metapopulation genetic algorithm: An efficient solution for the problem of large phylogeny estimationProceedings of the National Academy of Sciences, 2002
- MRBAYES: Bayesian inference of phylogenetic treesBioinformatics, 2001
- A General Empirical Model of Protein Evolution Derived from Multiple Protein Families Using a Maximum-Likelihood ApproachMolecular Biology and Evolution, 2001
- ATV: display and manipulation of annotated phylogenetic treesBioinformatics, 2001
- Stochastic search strategy for estimation of maximum likelihood phylogenetic trees.2001
- A genetic algorithm for maximum-likelihood phylogeny inference using nucleotide sequence dataMolecular Biology and Evolution, 1998
- Probability distribution of molecular evolutionary trees: A new method of phylogenetic inferenceJournal of Molecular Evolution, 1996