Systematic Discovery of New Genes in the Saccharomyces cerevisiae Genome
Open Access
- 1 February 2003
- journal article
- research article
- Published by Cold Spring Harbor Laboratory in Genome Research
- Vol. 13 (2) , 264-271
- https://doi.org/10.1101/gr.232903
Abstract
We used genome-wide comparative analysis of predicted protein sequences to identify many novel small genes, named smORFs forsmall open readingframes, within the budding yeast genome. Further analysis of 117 of these new genes showed that 84 are transcribed. We extended our analysis of one smORF conserved from yeast to human. This investigation provides an updated and comprehensive annotation of the yeast genome, validates additional concepts in the study of genomes in silico, and increases the expected numbers of coding sequences in a genome with the corresponding impact on future functional genomics and proteomics studies.Keywords
This publication has 27 references indexed in Scilit:
- Probabilistic prediction of Saccharomyces cerevisiae mRNA 3'-processing sitesNucleic Acids Research, 2002
- Dual requirement for yeast hnRNP Nab2p in mRNA poly(A) tail length control and nuclear exportThe EMBO Journal, 2002
- An integrated approach for finding overlooked genes in yeastNature Biotechnology, 2002
- Surveying Saccharomyces Genomes to Identify Functional Elements by Comparative DNA Sequence AnalysisGenome Research, 2001
- Genomic evidence for a complete sexual cycle in Candida albicansProceedings of the National Academy of Sciences, 2001
- Computational identification of Cis -regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae 1 1Edited by F. E. CohenJournal of Molecular Biology, 2000
- Analysis of the yeast genome: identification of new non-coding and small ORF-containing RNAsNucleic Acids Research, 1997
- Multicellular Ascomycetous Fungal Genomes Contain More Than 8000 GenesFungal Genetics and Biology, 1997
- Characterization of the Yeast TranscriptomeCell, 1997
- Life with 6000 GenesScience, 1996