The IPD and IMGT/HLA database: allele variant databases
Top Cited Papers
Open Access
- 20 November 2014
- journal article
- research article
- Published by Oxford University Press (OUP) in Nucleic Acids Research
- Vol. 43 (D1) , D423-D431
- https://doi.org/10.1093/nar/gku1161
Abstract
The Immuno Polymorphism Database (IPD) was developed to provide a centralized system for the study of polymorphism in genes of the immune system. Through the IPD project we have established a central platform for the curation and publication of locus-specific databases involved either directly or related to the function of the Major Histocompatibility Complex in a number of different species. We have collaborated with specialist groups or nomenclature committees that curate the individual sections before they are submitted to IPD for online publication. IPD consists of five core databases, with the IMGT/HLA Database as the primary database. Through the work of the various nomenclature committees, the HLA Informatics Group and in collaboration with the European Bioinformatics Institute we are able to provide public access to this data through the website http://www.ebi.ac.uk/ipd/. The IPD project continues to develop with new tools being added to address scientific developments, such as Next Generation Sequencing, and to address user feedback and requests. Regular updates to the website ensure that new and confirmatory sequences are dispersed to the immunogenetics community, and the wider research and clinical communities.Keywords
This publication has 53 references indexed in Scilit:
- Genotype List String: a grammar for describing HLA and KIR genotyping results in a text stringTissue Antigens, 2013
- The IMGT/HLA databaseNucleic Acids Research, 2012
- The Mouse Genome Database (MGD): comprehensive resource for genetics and genomics of the laboratory mouseNucleic Acids Research, 2011
- A new bioinformatics analysis tools framework at EMBL-EBINucleic Acids Research, 2010
- Nomenclature for factors of the HLA system, 2010Tissue Antigens, 2010
- Fast and efficient searching of biological data resources--using EB-eyeBriefings in Bioinformatics, 2010
- Web services at the European Bioinformatics Institute-2009Nucleic Acids Research, 2009
- The IMGT/HLA databaseNucleic Acids Research, 2008
- Gene map of the extended human MHCNature Reviews Genetics, 2004
- CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choiceNucleic Acids Research, 1994