The role of bioinformatics in pathway curation
Open Access
- 26 November 2008
- journal article
- Published by Springer Nature in Genes & Nutrition
- Vol. 3 (3-4) , 139-142
- https://doi.org/10.1007/s12263-008-0098-x
Abstract
Diagrams and models of biological pathways are useful tools in biology. Pathway diagrams are mainly used for illustrative purposes for instance in textbooks and in presentations. Pathway models are used in the analysis of genomic data. Bridging the gap between diagrams and models allows not only the analysis of genomics data and interactions but also the visualisation of the results in a variety of different ways. The knowledge needed for pathway creation and curation is available from three distinct sources: databases, literature and experts. We describe the role of bioinformatics in facilitating the creation and curation of pathway.Keywords
This publication has 12 references indexed in Scilit:
- Presenting and exploring biological pathways with PathVisioBMC Bioinformatics, 2008
- We the curatorsNature Methods, 2008
- The public road to high-quality curated biological pathwaysDrug Discovery Today, 2008
- Literature mining for the biologist: from information retrieval to biological discoveryNature Reviews Genetics, 2006
- Pathguide: a Pathway Resource ListNucleic Acids Research, 2006
- Microarray data analysis: from disarray to consolidation and consensusNature Reviews Genetics, 2006
- Internet encyclopaedias go head to headPublished by Springer Nature ,2005
- PAX of mind for pathway researchersDrug Discovery Today, 2005
- Pathway information for systems biologyFEBS Letters, 2005
- KEGG: Kyoto Encyclopedia of Genes and GenomesNucleic Acids Research, 1999