Simulating normalizing constants: from importance sampling to bridge sampling to path sampling
Open Access
- 1 May 1998
- journal article
- Published by Institute of Mathematical Statistics in Statistical Science
- Vol. 13 (2) , 163-185
- https://doi.org/10.1214/ss/1028905934
Abstract
Computing (ratios of) normalizing constants of probability models is a fundamental computational problem for many statistical and scientific studies. Monte Carlo simulation is an effective technique, especially with complex and high-dimensional models. This paper aims to bring to the attention of general statistical audiences of some effective methods originating from theoretical physics and at the same time to explore these methods from a more statistical perspective, through establishing theoretical connections and illustrating their uses with statistical problems. We show that the acceptance ratio method and thermodynamic integration are natural generalizations of importance sampling, which is most familiar to statistical audiences. The former generalizes importance sampling through the use of a single "bridge" density and is thus a case of bridge sampling in the sense of Meng and Wong. Thermodynamic integration, which is also known in the numerical analysis literature as Ogata's method for high-dimensional integration, corresponds to the use of infinitely many and continuously connected bridges (and thus a "path"). Our path sampling formulation offers more flexibility and thus potential efficiency to thermodynamic integration, and the search of optimal paths turns out to have close connections with the Jeffreys prior density and the Rao and Hellinger distances between two densities. We provide an informative theoretical example as well as two empirical examples (involving 17- to 70-dimensional integrations) to illustrate the potential and implementation of path sampling. We also discuss some open problems.Keywords
This publication has 37 references indexed in Scilit:
- Estimating the Probability of Events That have Never Occurred: When is Your Vote Decisive?Journal of the American Statistical Association, 1998
- Fitting Full-Information Item Factor Models and an Empirical Investigation of Bridge SamplingJournal of the American Statistical Association, 1996
- Annealing Markov Chain Monte Carlo with Applications to Ancestral InferenceJournal of the American Statistical Association, 1995
- Methods for Approximating Integrals in Statistics with Special Emphasis on Bayesian Integration ProblemsStatistical Science, 1995
- Sequential Imputations and Bayesian Missing Data ProblemsJournal of the American Statistical Association, 1994
- Inference from Iterative Simulation Using Multiple SequencesStatistical Science, 1992
- Prediction and Inference for Truncated Spatial DataJournal of Computational and Graphical Statistics, 1992
- Sampling-Based Approaches to Calculating Marginal DensitiesJournal of the American Statistical Association, 1990
- Bayes Methods for Combining the Results of Cancer Studies in Humans and Other SpeciesJournal of the American Statistical Association, 1983
- Pulmonary oxygen transport during activity in lizardsRespiration Physiology, 1981