The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation
Top Cited Papers
- 1 May 2007
- journal article
- research article
- Published by Proceedings of the National Academy of Sciences in Proceedings of the National Academy of Sciences
- Vol. 104 (18) , 7705-7710
- https://doi.org/10.1073/pnas.0611046104
Abstract
The smallest known eukaryotes, at ≈1-μm diameter, are Ostreococcus tauri and related species of marine phytoplankton. The genome of Ostreococcus lucimarinus has been completed and compared with that of O. tauri. This comparison reveals surprising differences across orthologous chromosomes in the two species from highly syntenic chromosomes in most cases to chromosomes with almost no similarity. Species divergence in these phytoplankton is occurring through multiple mechanisms acting differently on different chromosomes and likely including acquisition of new genes through horizontal gene transfer. We speculate that this latter process may be involved in altering the cell-surface characteristics of each species. In addition, the genome of O. lucimarinus provides insights into the unique metal metabolism of these organisms, which are predicted to have a large number of selenocysteine-containing proteins. Selenoenzymes are more catalytically active than similar enzymes lacking selenium, and thus the cell may require less of that protein. As reported here, selenoenzymes, novel fusion proteins, and loss of some major protein families including ones associated with chromatin are likely important adaptations for achieving a small cell size.Keywords
This publication has 58 references indexed in Scilit:
- Catalytic Advantages Provided by Selenocysteine in Methionine-S-Sulfoxide ReductasesBiochemistry, 2006
- Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique featuresProceedings of the National Academy of Sciences, 2006
- Abundance and Distribution of Ostreococcus sp. in the San Pedro Channel, California, as Revealed by Quantitative PCRApplied and Environmental Microbiology, 2006
- Diversity of Picoplanktonic Prasinophytes Assessed by Direct Nuclear SSU rDNA Sequencing of Environmental Samples and Novel Isolates Retrieved from Oceanic and Coastal Marine EcosystemsProtist, 2004
- Environmental Genome Shotgun Sequencing of the Sargasso SeaScience, 2004
- BLAT—The BLAST-Like Alignment ToolGenome Research, 2002
- Study of Genetic Diversity of Eukaryotic Picoplankton in Different Oceanic Regions by Small-Subunit rRNA Gene Cloning and SequencingApplied and Environmental Microbiology, 2001
- Fully automated genome analysis that reflects user needs and preferences. A detailed introduction to the MAGPIE system architectureBiochimie, 1996
- Basic Local Alignment Search ToolJournal of Molecular Biology, 1990
- Basic local alignment search toolJournal of Molecular Biology, 1990