Excited state tautomerism of the DNA base guanine: A restricted open-shell Kohn–Sham study
- 22 March 2003
- journal article
- research article
- Published by AIP Publishing in The Journal of Chemical Physics
- Vol. 118 (12) , 5400-5407
- https://doi.org/10.1063/1.1555121
Abstract
The relative stabilities of the six lowest energy tautomers of the DNA base guanine have been investigated in the first excited singlet state, employing the restricted open-shell Kohn–Sham (ROKS) method. Comparison of the optimized geometries to the respective ground-state structures reveals large distortions for the keto tautomers, whereas the enol tautomers remain essentially planar. Harmonic vibrational spectra in the state have been calculated using the ROKS potential energy surfaces. Adiabatic excitation energies together with characteristic vibrational features of the individual guanine tautomers enable us to unambiguously assign recent experimental IR-UV spectra. Velocity autocorrelation functions obtained from adiabatic excited state Car–Parrinello molecular dynamics simulations demonstrate that anharmonic effects only play a minor role.
Keywords
This publication has 38 references indexed in Scilit:
- The origin of spontaneous point mutations in DNA via Löwdin mechanism of proton tunneling in DNA base pairs: Cure with covalent base pairing*International Journal of Quantum Chemistry, 2002
- Guanine tautomerism revealed by UV–UV and IR–UV hole burning spectroscopyThe Journal of Chemical Physics, 2001
- Ultraviolet spectroscopy and tautomerism of the DNA base guanine and its hydrate formed in a supersonic jetChemical Physics, 2001
- Pairing of isolated nucleic-acid bases in the absence of the DNA backboneNature, 2000
- Energy Increment Method Based on Quantum Chemical Results: A General Recipe for Approximative Prediction of Isomerization and Tautomerization Energies of Pyrimidine and Purine Nucleic Acid Bases and Related CompoundsThe Journal of Physical Chemistry A, 1999
- Preface to a Grammar of BiologyScience, 1971
- Vorwort zu einer Grammatik der BiologieCellular and Molecular Life Sciences, 1970
- Genetical Implications of the Structure of Deoxyribonucleic AcidNature, 1953
- Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic AcidNature, 1953
- Chemical specificity of nucleic acids and mechanism of their enzymatic degradationCellular and Molecular Life Sciences, 1950