A rapid method for microarray cross platform comparisons using gene expression signatures

This publication has 19 references indexed in Scilit:

• Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
  Proceedings of the National Academy of Sciences, 2005
• Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements
  BMC Bioinformatics, 2005
• Independence and reproducibility across microarray platforms
  Nature Methods, 2005
• A sequence-based identification of the genes detected by probesets on the Affymetrix U133 plus 2.0 array
  Nucleic Acids Research, 2005
• Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms
  Nucleic Acids Research, 2005
• An oncogenic KRAS2 expression signature identified by cross-species gene-expression analysis
  Nature Genetics, 2004
• Sequence-matched probes produce increased cross-platform consistency and more reproducible biological results in microarray-based gene expression measurements
  Nucleic Acids Research, 2004
• Comparing cDNA and oligonucleotide array data: concordance of gene expression across platforms for the NCI-60 cancer cells
  Genome Biology, 2003
• Evaluation of gene expression measurements from commercial microarray platforms
  Nucleic Acids Research, 2003
• PGC-1α-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes
  Nature Genetics, 2003