Alternative expression analysis by RNA sequencing
- 12 September 2010
- journal article
- research article
- Published by Springer Nature in Nature Methods
- Vol. 7 (10) , 843-847
- https://doi.org/10.1038/nmeth.1503
Abstract
Alternative expression analysis by sequencing (ALEXA-seq) aligns RNA-seq reads from different cell types to a database of alternative expression sequence features and quantifies isoforms that are differentially expressed between samples.Keywords
This publication has 31 references indexed in Scilit:
- Detection of splice junctions from paired-end RNA-seq data by SpliceMapNucleic Acids Research, 2010
- TopHat: discovering splice junctions with RNA-SeqBioinformatics, 2009
- Annotating genomes with massive-scale RNA sequencingGenome Biology, 2008
- Identification of Alternative Splicing Markers for Breast CancerCancer Research, 2008
- A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human TranscriptomeScience, 2008
- Stem cell transcriptome profiling via massive-scale mRNA sequencingNature Methods, 2008
- Mapping and quantifying mammalian transcriptomes by RNA-SeqNature Methods, 2008
- ALEXA: a microarray design platform for alternative expression analysisNature Methods, 2008
- Repbase Update, a database of eukaryotic repetitive elementsCytogenetic and Genome Research, 2005
- Isolation and Characterization of an Undifferentiated Human Colon Carcinoma Cell Line (MIP-101)Cancer Investigation, 1987