Ensembl's 10th year
Open Access
- 11 November 2009
- journal article
- research article
- Published by Oxford University Press (OUP) in Nucleic Acids Research
- Vol. 38 (suppl_1) , D557-D562
- https://doi.org/10.1093/nar/gkp972
Abstract
Ensembl (http://www.ensembl.org) integrates genomic information for a comprehensive set of chordate genomes with a particular focus on resources for human, mouse, rat, zebrafish and other high-value sequenced genomes. We provide complete gene annotations for all supported species in addition to specific resources that target genome variation, function and evolution. Ensembl data is accessible in a variety of formats including via our genome browser, API and BioMart. This year marks the tenth anniversary of Ensembl and in that time the project has grown with advances in genome technology. As of release 56 ( September 2009), Ensembl supports 51 species including marmoset, pig, zebra finch, lizard, gorilla and wallaby, which were added in the past year. Major additions and improvements to Ensembl since our previous report include the incorporation of the human GRCh37 assembly, enhanced visualisation and data-mining options for the Ensembl regulatory features and continued development of our software infrastructure.Keywords
This publication has 25 references indexed in Scilit:
- Database resources of the National Center for Biotechnology InformationNucleic Acids Research, 2009
- NCBI Reference Sequences: current status, policy and new initiativesNucleic Acids Research, 2009
- The Universal Protein Resource (UniProt) 2009Nucleic Acids Research, 2009
- Sequence progressive alignment, a framework for practical large-scale probabilistic consistency alignmentBioinformatics, 2008
- Ensembl 2009Nucleic Acids Research, 2008
- The UCSC Genome Browser Database: update 2009Nucleic Acids Research, 2008
- The Rat Genome Database 2009: variation, ontologies and pathwaysNucleic Acids Research, 2008
- Enredo and Pecan: Genome-wide mammalian consistency-based multiple alignment with paralogsGenome Research, 2008
- Genome-wide nucleotide-level mammalian ancestor reconstructionGenome Research, 2008
- Combinatorial patterns of histone acetylations and methylations in the human genomeNature Genetics, 2008