Exploring the Active‐Site of a Rationally Redesigned Lipase for Catalysis of Michael‐Type Additions
- 28 January 2005
- journal article
- research article
- Published by Wiley in ChemBioChem
- Vol. 6 (2) , 331-336
- https://doi.org/10.1002/cbic.200400213
Abstract
Michael-type additions of various thiols and α,β-unsaturated carbonyl compounds were performed in organic solvent catalyzed by wild-type and a rationally redesigned mutant of Candida antarctica lipase B. The mutant lacks the nucleophilic serine 105 in the active-site; this results in a changed catalytic mechanism of the enzyme. The possibility of utilizing this mutant for Michael-type additions was initially explored by quantum-chemical calculations on the reaction between acrolein and methanethiol in a model system. The model system was constructed on the basis of docking and molecular-dynamics simulations and was designed to simulate the catalytic properties of the active site. The catalytic system was explored experimentally with a range of different substrates. The kcat values were found to be in the range of 10−3 to 4 min−1, similar to the values obtained with aldolase antibodies. The enzyme proficiency was 107. Furthermore, the Michael-type reactions followed saturation kinetics and were confirmed to take place in the enzyme active site.Keywords
This publication has 23 references indexed in Scilit:
- Michael addition of imidazole with acrylates catalyzed by alkaline protease from Bacillus subtilis in organic mediaBiotechnology Letters, 2004
- Rational design of a lipase to accommodate catalysis of Baeyer?Villiger oxidation with hydrogen peroxideJournal of Molecular Modeling, 2003
- A General, Brønsted Acid-Catalyzed Hetero-Michael Addition of Nitrogen, Oxygen, and Sulfur NucleophilesOrganic Letters, 2003
- Carbon−Carbon Bonds by Hydrolytic EnzymesJournal of the American Chemical Society, 2002
- Recent Advances in Catalytic Enantioselective Michael AdditionsSynthesis, 2001
- Pyridoxal 5‘-Phosphate-Dependent α,β-Elimination Reactions: Mechanism of O-Acetylserine SulfhydrylaseAccounts of Chemical Research, 2000
- Ab initio and density functional theory studies of the catalytic mechanism for ester hydrolysis in serine hydrolasesInternational Journal of Quantum Chemistry, 1998
- Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy functionJournal of Computational Chemistry, 1998
- 5, 6-Dihydropyrimidine Adducts in the Reactions and Interactions of Pyrimidines with ProteinsProgress in Nucleic Acid Research and Molecular Biology, 1992
- Synthesis of optically active trifluorinated compounds: asymmetric Michael addition with hydrolytic enzymesJournal of the Chemical Society, Chemical Communications, 1986