The use of tailed octamer primers for cycle sequencing
Open Access
- 1 November 1998
- journal article
- research article
- Published by Oxford University Press (OUP) in Nucleic Acids Research
- Vol. 26 (22) , 5225-5227
- https://doi.org/10.1093/nar/26.22.5225
Abstract
Studies have been carried out on the use of octamer oligonucleotides tailed with different base analogues as primers in cycle sequencing reactions. 5-Nitroindole tails improved the performance as primers of a number of octamers. A tail length of three or four 5-nitroindole residues significantly increased the sequencing signal intensity for almost all primers. The use of incomplete libraries of tailed octamer primers for primer walking is discussed.Keywords
This publication has 11 references indexed in Scilit:
- Stability and structure of DNA oligonucleotides containing non-specific base analoguesJournal of Molecular Biology, 1997
- 3-Nitropyrrole and 5-nitroindole as universal bases in primers for DNA sequencing and PCRNucleic Acids Research, 1995
- Synthesis, Structure, and Deoxyribonucleic Acid Sequencing with a Universal Nucleoside: 1-(2'-Deoxy-.beta.-D-ribofuranosyl)-3-nitropyrroleJournal of the American Chemical Society, 1995
- 5-Nitroindole as an universal base analogueNucleic Acids Research, 1994
- The application of markov chain analysis to oligonucleotide frequency prediction and physical mappingofDrosophila melanogasterNucleic Acids Research, 1992
- Synthesis of oligodeoxyribonucleotides containing degenerate bases and their use as primers in the polymerase chain reactionNucleic Acids Research, 1992
- Mono- through hexanucleotide composition of the sense strand of yeast DNA: a Markov chain analysisNucleic Acids Research, 1988
- Mono-through hexanucleotide composition of the Escherichia coli genome: a Markov chain analysisNucleic Acids Research, 1987
- Nucleosides and nucleotides. Part 25.. Synthesis of a protected 1‐(2′‐deoxy‐β‐D‐ribofuranosyl)‐1 H‐benzimidazole 3′‐phosphateHelvetica Chimica Acta, 1987
- Rapid synthesis of oligodeoxyribonucleotides VI. Effident, mechanised synthesis of heptadecadeoxyribonucleotides by an improved solid phase phosphotriester routeNucleic Acids Research, 1981