Transition-state stabilization by adenosine deaminase: 1,6-addition of water to purine ribonucleoside, the enzyme's affinity for 6-hydroxy-1,6-dihydropurine ribonucleoside, and the effective concentration of substrate water at the active site
- 7 February 1989
- journal article
- research article
- Published by American Chemical Society (ACS) in Biochemistry
- Vol. 28 (3) , 1242-1247
- https://doi.org/10.1021/bi00429a043
Abstract
Positions of equilibria of highly unfavorable addition reactions, whose products are present at concentrations below the limits of detection, can be determined from equilibra of combination of anionic nucleophiles with quaternized enamies. Applied to the newly prepared 1-methylpurinium ribonucleoside cation, this method yields approximate equilibrium constants of 2 .times. 10-9 M-1 for addition of water and 4 .times. 10-5 M-1 for addition of N-acetylcysteine to neutral purine ribonucleoside, in dilute aqueous solution. Positions of 13C magnetic resonances and UV absorption and UV absorption maxima of the above complexes and comparison with those of adenosine deaminase complexes strongly suggest that purine ribonucleoside is bound by adenosine deaminase as the 1,6 covalent hydrate, not as a covalently bonded complex formed by addition of a thiol group at the active site. The favorable position of equilibrium of the hydration reaction on the enzyme, together with its extremely unfavorable position in free solution, indicates that the effective activity of substrate water at the active site is in the neighborhood of 1010 M. The Ki value of the acive diastereomer of 6-hydroxy-1,6-dihydropurine ribonucleoside is estimated as 1.6 .times. 1013 M, more than 8 orders of magnitude lower than the apparent dissociation constants of enzyme complexes with the substrate adenosine or the product inosine. The enzyme''s remarkable affinity for this hydrated species, which is vanishingly rare in free solution, seems understandable in terms of the hydrate''s close resemblance to a hydrated intermediate approaching the transition state is direct water attack on adensoine.This publication has 8 references indexed in Scilit:
- Adenosine deaminase converts purine riboside into an analog of a reactive intermediate: a carbon-13 NMR and kinetic studyBiochemistry, 1987
- Evidence from nitrogen-15 and solvent deuterium isotope effects on the chemical mechanism of adenosine deaminaseBiochemistry, 1987
- Transition state stabilization by deaminases: Rates of nonenzymatic hydrolysis of adenosine and cytidineBioorganic Chemistry, 1987
- Transition-state stabilization by adenosine deaminase: structural studies of its inhibitory complex with deoxycoformycinBiochemistry, 1986
- Identification of oxygen nucleophiles in tetrahedral intermediates: 2H and 18O induced isotope shifts in 13C NMR spectra of pepsin-bound peptide ketone pseudosubstratesBiochemical and Biophysical Research Communications, 1985
- Spontaneous epimerization of (S)-deoxycoformycin and interaction of (R)-deoxycoformycin, (S)-deoxycoformycin, and 8-ketodeoxycoformycin with adenosine deaminaseBiochemistry, 1985
- Role of Sulphydryl Groups in Adenosine DeaminaseEuropean Journal of Biochemistry, 1967
- SUBSTRATE BINDING BY ADENOSINE DEAMINASE - SPECIFICITY PH DEPENDENCE AND COMPETITION BY MERCURIALS1967