Detection of free‐circulating tumor‐associated DNA in plasma of colorectal cancer patients and its association with prognosis

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Abstract
Tumor cells are characterized by specific genetic alterations. When such genetic alterations are identified in body fluid including plasma, regardless of the presence of detectable tumor cells, it shows the existence of free‐circulating tumor‐associated DNA. The objective of our study was to assess the prognostic value of free‐circulating tumor‐associated DNA in colorectal cancer patients' plasma. The first step of our work was to find common genetic alterations in tumors that would subsequently be used for plasma DNA screening. We focused on KRAS2 mutations in codons 12 and 13 by the mutant allele‐specific amplification (MASA) method and p16 hypermethylation by the methylation‐specific polymerase chain reaction (MSP) method. Patients with a tumor presenting either alteration were selected for plasma screening; 58 tumors were analyzed forKRAS2mutations and tested forp16gene promoter methylation. Survival and recurrence rates were assessed in patients with and without free‐circulating tumor‐associated DNA alterations in plasma. Of the 58 tumors analyzed, 39 (67%) demonstrated either one or both of the studied genetic alterations. Twenty‐two (38%) were mutated atKRAS2, and an identical alteration was detected in 10 (45%) of the 22 corresponding plasma samples. Thirty‐one (53%) hadp16gene promoter hypermethylation that could also be detected in the plasma in 21 cases (68%). Among the 39 patients who had one or the other alteration in tumor DNA, 37 had at least one reliable plasma test. In 26 (70%) of the 37 patients, free‐circulating tumor‐associated DNA was detected in plasma. The 2‐year overall survival rate was 48% in the group where free‐circulating tumor‐associated DNA was detected in plasma and 100% in the one where free‐circulating tumor‐associated DNA was not detected in plasma (p< 0.03). Among these 37 patients, 25 patients had a stage I, II or III disease. In this subgroup of patients, the 2‐year recurrence‐free survival rate for the 17 patients with free‐circulating tumor‐associated DNA detected in plasma was 66%, compared to 100% for the 8 patients without free‐circulating tumor‐associated DNA detected in plasma (p= 0.044). The presence of free‐circulating tumor‐associated DNA in plasma seems to be a relevant prognostic marker for patients with colorectal cancer and may be used to identify patients with a high risk of recurrence.
Funding Information
  • Direction de la recherche clinique de l'assistance publique hôpitaux de Paris (TBI-9706)
  • La Société nationale Française de Gastroentérologie
  • Région Ile-de-France