Medusa: a simple tool for interaction graph analysis
Open Access
- 27 September 2005
- journal article
- research article
- Published by Oxford University Press (OUP) in Bioinformatics
- Vol. 21 (24) , 4432-4433
- https://doi.org/10.1093/bioinformatics/bti696
Abstract
Summary: Medusa is a Java application for visualizing and manipulating graphs of interaction, such as data from the STRING database. It features an intuitive user interface developed with the help of biologists. Medusa is optimized for accessing protein interaction data from STRING, but can be used for any type of graph from any scientific field. Availability: Medusa, along with sample datasets and instructions, can be downloaded from Contact:hooper@embl.deKeywords
This publication has 8 references indexed in Scilit:
- Systematic Association of Genes to Phenotypes by Genome and Literature MiningPLoS Biology, 2005
- metaSHARK: software for automated metabolic network prediction from DNA sequence and its application to the genomes of Plasmodium falciparum and Eimeria tenellaNucleic Acids Research, 2005
- Dynamic Complex Formation During the Yeast Cell CycleScience, 2005
- STRING: known and predicted protein-protein associations, integrated and transferred across organismsNucleic Acids Research, 2004
- ProViz: protein interaction visualization and explorationBioinformatics, 2004
- CNplot: visualizing pre-clustered networksBioinformatics, 2004
- Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction NetworksGenome Research, 2003
- Osprey: a network visualization systemGenome Biology, 2003