Molecular Dynamics Simulation of a PNA·DNA·PNA Triple Helix in Aqueous Solution

This publication has 28 references indexed in Scilit:

• Theoretical studies of an exceptionally stable RNA tetraloop: observation of convergence from an incorrect NMR structure to the correct one using unrestrained molecular dynamics
  Journal of Molecular Biology, 1997
• AMBER, a package of computer programs for applying molecular mechanics, normal mode analysis, molecular dynamics and free energy calculations to simulate the structural and energetic properties of molecules
  Computer Physics Communications, 1995
• A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules
  Journal of the American Chemical Society, 1995
• PNA hybridizes to complementary oligonucleotides obeying the Watson–Crick hydrogen-bonding rules
  Nature, 1993
• A well-behaved electrostatic potential based method using charge restraints for deriving atomic charges: the RESP model
  The Journal of Physical Chemistry, 1993
• Symmetry and molecular structure of a DNA triple helix: d(T)n.cntdot.d(A)n.cntdot.d(T)n
  Biochemistry, 1993
• Molecular structure of the B-DNA dodecamer d(CGCAAATTTGCG)2 An examination of propeller twist and minor-groove water structure at 2·2Åresolution
  Journal of Molecular Biology, 1992
• Sequence-Selective Recognition of DNA by Strand Displacement with a Thymine-Substituted Polyamide
  Science, 1991
• Development and use of quantum mechanical molecular models. 76. AM1: a new general purpose quantum mechanical molecular model
  Journal of the American Chemical Society, 1985
• Comparison of simple potential functions for simulating liquid water
  The Journal of Chemical Physics, 1983