Forced unfolding of the fibronectin type III module reveals a tensile molecular recognition switch
Open Access
- 16 February 1999
- journal article
- research article
- Published by Proceedings of the National Academy of Sciences in Proceedings of the National Academy of Sciences
- Vol. 96 (4) , 1351-1356
- https://doi.org/10.1073/pnas.96.4.1351
Abstract
The 10th type III module of fibronectin possesses a β-sandwich structure consisting of seven β-strands (A–G) that are arranged in two antiparallel sheets. It mediates cell adhesion to surfaces via its integrin binding motif, Arg78, Gly79, and Asp80 (RGD), which is placed at the apex of the loop connecting β-strands F and G. Steered molecular dynamics simulations in which tension is applied to the protein’s terminal ends reveal that the β-strand G is the first to break away from the module on forced unfolding whereas the remaining fold maintains its structural integrity. The separation of strand G from the remaining fold results in a gradual shortening of the distance between the apex of the RGD-containing loop and the module surface, which potentially reduces the loop’s accessibility to surface-bound integrins. The shortening is followed by a straightening of the RGD-loop from a tight β-turn into a linear conformation, which suggests a further decrease of affinity and selectivity to integrins. The RGD-loop therefore is located strategically to undergo strong conformational changes in the early stretching stages of the module and thus constitutes a mechanosensitive control of ligand recognition.Keywords
This publication has 36 references indexed in Scilit:
- All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of ProteinsThe Journal of Physical Chemistry B, 1998
- Extraction of Lipids from Phospholipid Membranes by Steered Molecular DynamicsJournal of Molecular Modeling, 1997
- A comparison of the folding kinetics and thermodynamics of two homologous fibronectin type III modulesJournal of Molecular Biology, 1997
- Backbone dynamics of homologous fibronectin type III cell adhesion domains from fibronectin and tenascinStructure, 1997
- Elasticity and unfolding of single molecules of the giant muscle protein titinNature, 1997
- Ligand Binding: Molecular Mechanics Calculation of the Streptavidin-Biotin Rupture ForceScience, 1996
- 2.0 Å Crystal Structure of a Four-Domain Segment of Human Fibronectin Encompassing the RGD Loop and Synergy RegionCell, 1996
- Building proteins with fibronectin type III modulesStructure, 1994
- MOLSCRIPT: a program to produce both detailed and schematic plots of protein structuresJournal of Applied Crystallography, 1991
- Comparison of simple potential functions for simulating liquid waterThe Journal of Chemical Physics, 1983