RMD: a rice mutant database for functional analysis of the rice genome
Open Access
- 1 January 2006
- journal article
- research article
- Published by Oxford University Press (OUP) in Nucleic Acids Research
- Vol. 34 (90001) , D745-D748
- https://doi.org/10.1093/nar/gkj016
Abstract
Rice Mutant Database (RMD, http://rmd.ncpgr.cn) is an archive for collecting, managing and searching information of the T-DNA insertion mutants generated by an enhancer trap system. We have generated ∼129 000 rice mutant (enhancer trap) lines that are now being gathered in the database. Information collected in RMD includes mutant phenotypes, reporter-gene expression patterns, flanking sequences of T-DNA insertional sites, seed availability and others, and can be searched by respective ID, keyword, nucleotide sequence or protein sequence on the website. This database is both a mutant collection for identifying novel genes and regulatory elements and a pattern line collection for ectopic expression of target gene in specific tissue or at specific growth stage.Keywords
This publication has 11 references indexed in Scilit:
- Features of the expressed sequences revealed by a large‐scale analysis of ESTs from a normalized cDNA library of the elite indica rice cultivar Minghui 63The Plant Journal, 2005
- High throughput T‐DNA insertion mutagenesis in rice: a first step towards in silico reverse geneticsThe Plant Journal, 2004
- Rice Mutant Resources for Gene DiscoveryPlant Molecular Biology, 2004
- Development of enhancer trap lines for functional analysis of the rice genomeThe Plant Journal, 2003
- A Draft Sequence of the Rice Genome ( Oryza sativa L. ssp. indica )Science, 2002
- Establishment of gene‐trap and enhancer‐trap systems in the moss Physcomitrella patensThe Plant Journal, 2001
- Ten Years of Enhancer Detection: Lessons from the FlyPlant Cell, 1999
- Generation of enhancer trap lines in Arabidopsis and characterization of expression patterns in the inflorescenceThe Plant Journal, 1999
- Gapped BLAST and PSI-BLAST: a new generation of protein database search programsNucleic Acids Research, 1997
- Lactose genes fused to exogenous promoters in one step using a Mu-lac bacteriophage: in vivo probe for transcriptional control sequences.Proceedings of the National Academy of Sciences, 1979