Fast, accurate semiempirical molecular orbital calculations for macromolecules
- 15 July 1997
- journal article
- Published by AIP Publishing in The Journal of Chemical Physics
- Vol. 107 (3) , 879-893
- https://doi.org/10.1063/1.474386
Abstract
A detailed review of the semiempirical divide-and-conquer (D&C) method is given, including a new approach to subsetting, which involves dual buffer regions. Comparisons are drawn between this method and other semiempirical macromolecular schemes. D&C calculations are carried out using a basic 32 Mbyte memory workstation on a variety of peptide systems, including proteins containing up to 1960 atoms. Aspects of storage and SCF convergence are addressed, and parallelization of the D&C algorithm is discussed.Keywords
This publication has 25 references indexed in Scilit:
- A density-matrix divide-and-conquer approach for electronic structure calculations of large moleculesThe Journal of Chemical Physics, 1995
- Thermal expansion of hen egg-white lysozyme: Comparison of the 1·9 Å resolution structures of the tetragonal form of the enzyme at 100 K and 298 KJournal of Molecular Biology, 1994
- Ab initioelectronic-structure computations with the recursion methodPhysical Review B, 1993
- Direct calculation of electron density in density-functional theoryPhysical Review Letters, 1991
- The dynamic “level shift” method for improving the convergence of the SCF procedureJournal of Computational Chemistry, 1988
- Cryocrystallography of biological macromolecules: a generally applicable methodActa crystallographica Section B, Structural science, crystal engineering and materials, 1988
- Comparison of two highly refined structures of bovine pancreatic trypsin inhibitorJournal of Molecular Biology, 1987
- Structure of variant-3 scorpion neurotoxin from Centruroides sculpturatus ewing, refined at 1·8 Å resolutionJournal of Molecular Biology, 1983
- An interpolation method for forcing SCF convergenceThe Journal of Chemical Physics, 1981
- New Developments in Molecular Orbital TheoryReviews of Modern Physics, 1951