Physical scoring function based on AMBER force field and Poisson-Boltzmann implicit solvent for protein structure prediction
- 28 April 2004
- journal article
- research article
- Published by Wiley in Proteins-Structure Function and Bioinformatics
- Vol. 56 (3) , 475-486
- https://doi.org/10.1002/prot.20133
Abstract
No abstract availableKeywords
This publication has 83 references indexed in Scilit:
- A point‐charge force field for molecular mechanics simulations of proteins based on condensed‐phase quantum mechanical calculationsJournal of Computational Chemistry, 2003
- Using PC clusters to evaluate the transferability of molecular mechanics force fields for proteinsJournal of Computational Chemistry, 2002
- Decoys ‘R’ Us: A database of incorrect conformations to improve protein structure predictionProtein Science, 2000
- Discrimination of the native from misfolded protein models with an energy function including implicit solvationJournal of Molecular Biology, 1999
- Continuum solvation model: Computation of electrostatic forces from numerical solutions to the Poisson-Boltzmann equationPublished by Elsevier ,1999
- All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of ProteinsThe Journal of Physical Chemistry B, 1998
- Energy Functions that Discriminate X-ray and Near-native Folds from Well-constructed DecoysJournal of Molecular Biology, 1996
- A new approach to protein fold recognitionNature, 1992
- Dictionary of protein secondary structure: Pattern recognition of hydrogen‐bonded and geometrical featuresBiopolymers, 1983
- Calculation of the electric potential in the active site cleft due to α-helix dipolesJournal of Molecular Biology, 1982