Metabolic networks of microbial systems
Open Access
- 1 January 2003
- journal article
- Published by Springer Nature in Microbial Cell Factories
- Vol. 2 (1) , 3
- https://doi.org/10.1186/1475-2859-2-3
Abstract
In contrast to bioreactors the metabolites within the microbial cells are converted in an impure atmosphere, yet the productivity seems to be well regulated and not affected by changes in operation variables. These features are attributed to integral metabolic network within the microorganism. With the advent of neo-integrative proteomic approaches the understanding of integration of metabolic and protein-protein interaction networks have began. In this article we review the methods employed to determine the protein-protein interaction and their integration to define metabolite networks. We further present a review of current understanding of network properties, and benefit of studying the networks. The predictions using network structure, for example, in silico experiments help illustrate the importance of studying the network properties. The cells are regarded as complex system but their elements unlike complex systems interact selectively and nonlinearly to produce coherent rather than complex behaviors.Keywords
This publication has 55 references indexed in Scilit:
- Metabolic network structure determines key aspects of functionality and regulationNature, 2002
- Comparative assessment of large-scale data sets of protein–protein interactionsNature, 2002
- Systems Biology: A Brief OverviewScience, 2002
- Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometryNature, 2002
- Functional organization of the yeast proteome by systematic analysis of protein complexesNature, 2002
- Beyond synexpression relationships: local clustering of time-shifted and inverted gene expression profiles identifies new, biologically relevant interactionsJournal of Molecular Biology, 2001
- A comprehensive two-hybrid analysis to explore the yeast protein interactomeProceedings of the National Academy of Sciences, 2001
- Detecting Protein Function and Protein-Protein Interactions from Genome SequencesScience, 1999
- Phage antibodies: filamentous phage displaying antibody variable domainsNature, 1990
- A novel genetic system to detect protein–protein interactionsNature, 1989