Patterns of DNA sequence diversity and genetic structure after a range expansion: lessons from the infinite‐island model
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- 28 October 2003
- journal article
- research article
- Published by Wiley in Molecular Ecology
- Vol. 13 (4) , 853-864
- https://doi.org/10.1046/j.1365-294x.2003.02004.x
Abstract
It has been long recognized that population demographic expansions lead to distinctive features in the molecular diversity of populations. However, recent simulation results have suggested that a distinction could be made between a pure demographic expansion in an unsubdivided population, and a range expansion in a subdivided population, both leading to a large increase in the total number of the individuals. In order to better characterize the effect of a range expansion, I introduce a simple model of instantaneous expansion under an infinite‐island model, under which I derive the distribution of the number of mutation differences between pairs of genes (the mismatch distribution), the heterozygosity, the average number of pairwise difference, and the fixation index FST. These derivations are checked against simulations, and are shown to lead to results qualitatively similar to those one would obtain after a range expansion in a 2‐dimensional stepping‐stone model. I then apply these results to estimate immigration rates in hunter‐gather and post‐Neolithic human populations from patterns of mitochondrial (mtDNA) diversity. Potential problems with this estimation procedure are also discussed.Keywords
This publication has 44 references indexed in Scilit:
- Thermal acclimation of leaf respiration but not photosynthesis in Populus deltoides×nigraNew Phytologist, 2008
- Ecological Effects of Climate FluctuationsScience, 2002
- A Multispecies Overkill Simulation of the End-Pleistocene Megafaunal Mass ExtinctionScience, 2001
- Range Shifts and Adaptive Responses to Quaternary Climate ChangeScience, 2001
- Inference in Molecular Population GeneticsJournal of the Royal Statistical Society Series B: Statistical Methodology, 2000
- Spatial patterns of genetic variation generated by different forms of dispersal during range expansionHeredity, 1996
- Some genetic consequences of ice ages, and their role in divergence and speciationBiological Journal of the Linnean Society, 1996
- Some genetic consequences of ice ages, and their role in divergence and speciationBiological Journal of the Linnean Society, 1996
- A Genetic Perspective on the Origin and History of HumansAnnual Review of Ecology and Systematics, 1995
- Inbreeding coefficients and coalescence timesGenetics Research, 1991