DNA Data Bank of Japan (DDBJ) in XML
Open Access
- 1 January 2003
- journal article
- research article
- Published by Oxford University Press (OUP) in Nucleic Acids Research
- Vol. 31 (1) , 13-16
- https://doi.org/10.1093/nar/gkg088
Abstract
The DNA Data Bank of Japan (DDBJ, http://www.ddbj.nig.ac.jp ) has collected and released more entries and bases than last year. This is mainly due to large-scale submissions from Japanese sequencing teams on mouse, rice, chimpanzee, nematoda and other organisms. The contributions of DDBJ over the past year are 17.3% (entries) and 10.3% (bases) of the combined outputs of the International Nucleotide Sequence Databases (INSD). Our complete genome sequence database, Genome Information Broker (GIB), has been improved by incorporating XML. It is now possible to perform a more sophisticated database search against the new GIB than the ordinary BLAST or FASTA search.Keywords
This publication has 11 references indexed in Scilit:
- Genome Information Broker (GIB): data retrieval and comparative analysis system for completed microbial genomes and moreNucleic Acids Research, 2002
- DNA Data Bank of Japan (DDBJ) for genome scale research in life scienceNucleic Acids Research, 2002
- Functional annotation of a full-length mouse cDNA collectionNature, 2001
- DNA Data Bank of Japan at work on genome sequence dataNucleic Acids Research, 1998
- DNA Data Bank of Japan in the age of information biologyNucleic Acids Research, 1997
- Basic local alignment search toolJournal of Molecular Biology, 1990
- Rapid and Sensitive Protein Similarity SearchesScience, 1985
- DNA sequencing with chain-terminating inhibitorsProceedings of the National Academy of Sciences, 1977
- A new method for sequencing DNA.Proceedings of the National Academy of Sciences, 1977
- Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic AcidNature, 1953