A statistical method for identifying transition states in high dimensional problems
- 1 November 1986
- journal article
- Published by AIP Publishing in The Journal of Chemical Physics
- Vol. 85 (9) , 5045-5048
- https://doi.org/10.1063/1.451695
Abstract
A statistical method based on Monte Carlo sampling of paths associated with Markovian stochastic processes is proposed for the location of transition states in molecularly complex reactions. It is discussed in what respects the proposed method would identify transition state regions, and an algorithm for Metropolis sampling of Metropolis paths (based on the Metropolis random walk process) is devised. Physical aspects of this new algorithm are examined, and the relation of this method to simulated annealing algorithms for physical design of circuits is noted.Keywords
This publication has 16 references indexed in Scilit:
- Summary Abstract: A new approach to overlayer dynamicsJournal of Vacuum Science & Technology A, 1986
- Theory of classical diffusion jumps in solidsPhysical Review B, 1985
- Computer simulation of a quantum particle in a quenched disordered system: Direct observation of Lifshitz trapsPhysical Review B, 1985
- Sodium(1+) and potassium(1+) ion transport through a solvated gramicidin A transmembrane channel: molecular dynamics studies using parallel processorsThe Journal of Physical Chemistry, 1985
- Staging: A sampling technique for the Monte Carlo evaluation of path integralsPhysical Review B, 1985
- Effect of anharmonicity on diffusion jump ratesPhysical Review B, 1984
- Structure and dynamics of ion transport through gramicidin ABiophysical Journal, 1984
- Diffusion-controlled reactions: A variational formula for the optimum reaction coordinateThe Journal of Chemical Physics, 1983
- Optimization by Simulated AnnealingScience, 1983
- Dynamics of ligand binding to heme proteinsJournal of Molecular Biology, 1979