Higher-energy C-trap dissociation for peptide modification analysis
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- 26 August 2007
- journal article
- research article
- Published by Springer Nature in Nature Methods
- Vol. 4 (9) , 709-712
- https://doi.org/10.1038/nmeth1060
Abstract
Peptide sequencing is the basis of mass spectrometry–driven proteomics. Here we show that in the linear ion trap–orbitrap mass spectrometer (LTQ Orbitrap) peptide ions can be efficiently fragmented by high-accuracy and full-mass-range tandem mass spectrometry (MS/MS) via higher-energy C-trap dissociation (HCD). Immonium ions generated via HCD pinpoint modifications such as phosphotyrosine with very high confidence. Additionally we show that an added octopole collision cell facilitates de novo sequencing.Keywords
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