Efficient dynamic importance sampling of rare events in one dimension
- 27 December 2000
- journal article
- research article
- Published by American Physical Society (APS) in Physical Review E
- Vol. 63 (1) , 016702
- https://doi.org/10.1103/physreve.63.016702
Abstract
Exploiting stochastic path-integral theory, we obtain by simulation substantial gains in efficiency for the computation of reaction rates in one-dimensional, bistable, overdamped stochastic systems. Using a well-defined measure of efficiency, we compare implementations of “dynamic importance sampling” (DIMS) methods to unbiased simulation. The best DIMS algorithms are shown to increase efficiency by factors of approximately 20 for a barrier height and 300 for compared to unbiased simulation. The gains result from close emulation of natural (unbiased), instantonlike crossing events with artificially decreased waiting times between events that are corrected for in rate calculations. The artificial crossing events are generated using the closed-form solution to the most probable crossing event described by the Onsager-Machlup action. While the best biasing methods require the second derivative of the potential (resulting from the “Jacobian” term in the action, which is discussed at length), algorithms employing solely the first derivative do nearly as well. We discuss the importance of one-dimensional models to larger systems, and suggest extensions to higher-dimensional systems.
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This publication has 50 references indexed in Scilit:
- Temperature dependent reaction coordinatesThe Journal of Chemical Physics, 2000
- Efficient schemes to compute diffusive barrier crossing ratesMolecular Physics, 1997
- A chain of states method for investigating infrequent event processes occurring in multistate, multidimensional systemsThe Journal of Chemical Physics, 1993
- Reaction path study of conformational transitions in flexible systems: Applications to peptidesThe Journal of Chemical Physics, 1990
- Diffusion-controlled reactions: A variational formula for the optimum reaction coordinateThe Journal of Chemical Physics, 1983
- Diffusion in a bistable potential: The functional integral approachJournal of Statistical Physics, 1981
- Manifolds of equivalent path integral solutions of the Fokker-Planck equationZeitschrift für Physik B Condensed Matter, 1979
- Path integral formulation of general diffusion processesZeitschrift für Physik B Condensed Matter, 1977
- Functionals of paths of a diffusion process and the Onsager-Machlup functionZeitschrift für Physik B Condensed Matter, 1977
- Generalized Onsager-Machlup function and classes of path integral solutions of the Fokker-Planck equation and the master equationZeitschrift für Physik B Condensed Matter, 1976